Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
BLCA rs13170915 chr5:3511974 G/A 9.1E-6 405 17.4 19.77 4.37 KM Plot
BLCA rs13171097 chr5:3512130 G/A 9.1E-6 405 17.4 19.77 4.37 KM Plot
BLCA rs13173969 chr5:3487526 G/A 1.04E-5 403 17.4 19.4 4.37 KM Plot
BLCA rs13176060 chr5:3522987 C/T 9.79E-6 403 17.4 20.07 4.37 KM Plot
BLCA rs13178645 chr5:3501248 G/A 9.1E-6 405 17.23 19.92 4.37 KM Plot
BLCA rs137978790 chr4:119344898 C/A 1.16E-12 399 17.4 20.15 1.38 KM Plot
BLCA rs140691571 chr4:119344885 T/C 1.39E-12 397 17.4 20.15 1.38 KM Plot
BLCA rs142779718 chr13:25832082 AAAAT/A 4.1E-8 404 17.87 17.53 5.13 KM Plot
BLCA rs142801221 chr4:119337001 T/TG 1.03E-12 399 17.4 20.33 1.38 KM Plot
BLCA rs142978326 chr4:119328423 C/T 1.13E-12 400 17.4 20.15 1.38 KM Plot
BLCA rs143305253 chr12:123309154 TTATCCATAAAGAACTAAAAGTAGAA/T 5.04E-8 404 17.87 16.13 2.7 KM Plot
BLCA rs143752725 chr4:119333215 CTT/C 1.03E-12 399 17.4 20.33 1.38 KM Plot
BLCA rs145347430 chr5:3527238 C/CAGTGGACCCTGGAG 9.45E-6 405 17.07 20.07 4.37 KM Plot
BLCA rs146859741 chr3:44454031 GC/G 1.22E-5 402 17.67 18.48 7.2 KM Plot
BLCA rs1491191 chr10:133939616 C/T 1.48E-5 394 11.47 17.87 18.95 KM Plot